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COVID-Seq reports - Salemi Lab - University of Florida
- sample statistics
(Click on a column header to sort the table - click on C to display coverage plots)
| Run |
SampleName |
SamplingDate |
TotalReads |
HsReads |
CovReads |
CovPct |
| C | R00-NS2185 | MD-ID-08-1 | 2020-04-07 | 303,605 | 291,988 | 10,263 | 3.38% |
| C | R00-NS2185 | MD-ID-08-2 | 2020-04-16 | 1,648,017 | 1,627,797 | 12,890 | 0.78% |
| C | R00-NS2185 | MD-ID-08-3 | 2020-04-24 | 291,125 | 218,592 | 69,848 | 23.99% |
| C | R00-NS2185 | MD-ID-10-1 | 2020-04-07 | 1,987,266 | 1,965,936 | 6,431 | 0.32% |
| C | R00-NS2185 | MD-ID-10-2 | 2020-04-14 | 389,142 | 314,815 | 71,419 | 18.35% |
| C | R00-NS2185 | MD-ID-10-3 | 2020-04-21 | 256,528 | 222,714 | 32,240 | 12.57% |
| C | R00-NS2185 | MD-ID-11-1 | 2020-04-04 | 138,639 | 117,753 | 18,988 | 13.70% |
| C | R00-NS2185 | MD-ID-11-2 | 2020-04-11 | 641,922 | 631,974 | 8,693 | 1.35% |
| C | R00-NS2185 | MD-ID-11-3 | 2020-04-21 | 1,062,980 | 1,051,137 | 7,860 | 0.74% |
| C | R00-NS2185 | MD-ID-12-1 | 2020-04-03 | 1,546,960 | 1,534,566 | 7,051 | 0.46% |
| C | R00-NS2185 | MD-ID-12-2 | 2020-04-11 | 610,250 | 542,943 | 65,813 | 10.78% |
| C | R00-NS2185 | MD-ID-12-3 | 2020-04-16 | 244,781 | 212,838 | 31,012 | 12.67% |
| C | R00-NS2185 | MD-ID-12-4 | 2020-04-24 | 264,815 | 178,606 | 85,679 | 32.35% |
| C | R00-NS2185 | Miami-PBMC-1 | | 3,673,920 | 3,603,899 | 410 | 0.01% |
| C | R00-NS2185 | Miami-PBMC-2 | | 3,071,388 | 3,028,975 | 23,788 | 0.77% |
| C | R00-NS2185 | Miami-PBMC-3 | | 3,627,217 | 3,606,987 | 10,992 | 0.30% |
| C | R00-NS2185 | Miami-PBMC-4 | | 3,418,281 | 3,393,338 | 10,795 | 0.32% |
| C | R00-NS2185 | Miami-PBMC-5 | 2020-09-08 | 2,269,176 | 2,233,849 | 14,952 | 0.66% |
| C | R00-NS2185 | Miami-PBMC-6 | | 2,956,704 | 2,935,617 | 8,013 | 0.27% |
| C | R00-NS2185 | Miami-PBMC-7 | | 2,861,593 | 2,841,436 | 9,510 | 0.33% |
| C | R00-NS2185 | Miami-PBMC-8 | 2020-09-10 | 2,413,612 | 2,389,445 | 9,918 | 0.41% |
| C | R00-NS2185 | Miami-PBMC-9 | 2020-09-10 | 2,392,515 | 2,368,897 | 17,555 | 0.73% |
| C | R00-NS2185 | Miami-PBMC-10 | 2020-09-10 | 3,015,208 | 2,996,009 | 7,217 | 0.24% |
| C | R00-NS2185 | Miami-PBMC-11 | 2020-09-14 | 2,562,304 | 2,540,317 | 12,881 | 0.50% |
| C | R00-NS2185 | Miami-PBMC-12 | 2020-09-14 | 2,620,077 | 2,594,809 | 10,423 | 0.40% |
| C | R00-NS2185 | Miami-PBMC-13 | 2020-09-14 | 2,346,040 | 2,336,400 | 7,166 | 0.31% |
| C | R00-NS2185 | Miami-PBMC-14 | 2020-09-14 | 3,081,190 | 3,062,378 | 8,028 | 0.26% |
| C | R00-NS2185 | Miami-PBMC-15 | 2020-09-14 | 3,385,311 | 3,357,028 | 17,715 | 0.52% |
| C | R00-NS2185 | Miami-PBMC-16 | 2020-11-17 | 2,553,877 | 2,511,875 | 31,243 | 1.22% |
| C | R00-NS2185 | Miami-PBMC-17 | | 2,850,459 | 2,831,802 | 10,062 | 0.35% |
| C | R00-NS2185 | Miami-PBMC-18 | | 2,710,750 | 2,698,992 | 6,462 | 0.24% |
| C | R00-NS2185 | Miami-PBMC-19 | | 2,986,494 | 2,965,058 | 10,309 | 0.35% |
| C | R00-NS2185 | Miami-PBMC-20 | 2020-09-16 | 3,405,292 | 3,376,884 | 11,899 | 0.35% |
| C | R00-NS2185 | Miami-PBMC-21 | 2020-09-16 | 3,015,750 | 2,993,010 | 12,663 | 0.42% |
| C | R00-NS2185 | Miami-PBMC-22 | 2020-09-16 | 2,959,251 | 2,935,703 | 14,755 | 0.50% |
| C | R00-NS2185 | Miami-PBMC-23 | | 3,282,161 | 3,263,531 | 14,221 | 0.43% |
| C | R00-NS2185 | Miami-PBMC-24 | | 2,245,079 | 2,216,836 | 13,908 | 0.62% |
| C | R00-NS2185 | Miami-PBMC-25 | 2020-09-24 | 2,128,089 | 2,106,619 | 20,480 | 0.96% |
| C | R00-NS2185 | Miami-PBMC-26 | | 1,926,132 | 1,914,002 | 8,794 | 0.46% |
| C | R00-NS2185 | Miami-PBMC-27 | | 2,802,085 | 2,772,537 | 22,602 | 0.81% |
| C | R00-NS2185 | Miami-PBMC-28 | | 3,019,109 | 2,978,296 | 38,334 | 1.27% |
| C | R00-NS2185 | Miami-PBMC-29 | 2020-06-17 | 2,783,370 | 2,770,354 | 8,477 | 0.30% |
| C | R00-NS2185 | Miami-PBMC-30 | 2020-06-17 | 2,973,226 | 2,958,729 | 6,966 | 0.23% |
| C | R00-NS2185 | Miami-PBMC-31 | 2020-08-06 | 1,879,667 | 1,852,283 | 18,491 | 0.98% |
| C | R00-NS2185 | Miami-PBMC-32 | | 1,914,627 | 1,893,414 | 12,863 | 0.67% |
| C | R00-NS2185 | Miami-PBMC-33 | | 2,408,047 | 2,372,373 | 23,755 | 0.99% |
| C | R00-NS2185 | Miami-PBMC-34 | | 2,393,152 | 2,373,454 | 17,535 | 0.73% |
| C | R00-NS2185 | Miami-PBMC-35 | | 2,302,732 | 2,282,321 | 17,270 | 0.75% |
| C | R00-NS2185 | Miami-PBMC-36 | 2020-07-07 | 3,596,180 | 3,514,794 | 66,742 | 1.86% |
| C | R00-NS2185 | Miami-PBMC-37 | 2020-07-07 | 3,454,949 | 3,396,001 | 45,522 | 1.32% |
| C | R00-NS2185 | Miami-PBMC-38 | 2020-08-14 | 2,533,110 | 2,468,119 | 41,723 | 1.65% |
| C | R00-NS2185 | Miami-PBMC-39 | 2020-08-14 | 2,456,177 | 2,344,146 | 91,759 | 3.74% |
| C | R00-NS2185 | Miami-PBMC-40 | 2020-10-09 | 3,099,154 | 3,037,651 | 45,404 | 1.47% |
| C | R00-NS2185 | Miami-PBMC-41 | 2020-10-09 | 2,713,085 | 2,645,814 | 47,478 | 1.75% |
| C | R00-NS2185 | Miami-PBMC-42 | 2020-10-09 | 2,914,946 | 2,851,679 | 42,111 | 1.44% |
| C | R00-NS2185 | Miami-PBMC-43 | 2020-07-17 | 2,870,632 | 2,771,555 | 76,589 | 2.67% |
| C | R00-NS2185 | Miami-PBMC-44 | | 3,179,854 | 3,049,465 | 102,529 | 3.22% |
| C | R00-NS2185 | Miami-PBMC-45 | 2020-10-16 | 2,639,593 | 2,589,288 | 25,468 | 0.96% |
| C | R00-NS2185 | Miami-PBMC-46 | 2020-10-16 | 3,348,120 | 3,232,099 | 63,133 | 1.89% |
| C | R00-NS2185 | Miami-PBMC-47 | 2020-10-19 | 2,899,222 | 2,783,682 | 104,118 | 3.59% |
| C | R00-NS2185 | Miami-PBMC-48 | 2020-10-19 | 2,356,249 | 2,263,148 | 75,221 | 3.19% |
| C | R00-NS2185 | Miami-PBMC-49 | 2020-10-19 | 3,285,943 | 3,185,178 | 79,025 | 2.40% |
| C | R00-NS2185 | Miami-PBMC-50 | 2020-10-19 | 3,171,532 | 3,082,030 | 79,171 | 2.50% |
| C | R00-NS2185 | Miami-PBMC-51 | | 3,404,360 | 3,319,271 | 59,291 | 1.74% |
| C | R00-NS2185 | Miami-PBMC-52 | | 2,871,801 | 2,788,396 | 46,268 | 1.61% |
| C | R00-NS2185 | Miami-PBMC-53 | | 2,460,035 | 2,364,098 | 68,226 | 2.77% |
| C | R00-NS2185 | Miami-PBMC-54 | | 2,186,664 | 2,084,184 | 81,102 | 3.71% |
| C | R00-NS2185 | Miami-PBMC-55 | | 2,717,372 | 2,659,826 | 39,718 | 1.46% |
| C | R00-NS2185 | Miami-PBMC-56 | | 2,599,846 | 2,515,236 | 64,091 | 2.47% |
| C | R00-NS2185 | Miami-PBMC-57 | 2020-10-29 | 2,715,506 | 2,615,314 | 74,173 | 2.73% |
| C | R00-NS2185 | Miami-PBMC-58 | 2020-10-29 | 2,782,991 | 2,709,854 | 58,706 | 2.11% |
| C | R00-NS2185 | Miami-PBMC-59 | 2020-10-29 | 2,650,680 | 2,565,314 | 69,890 | 2.64% |
| C | R00-NS2185 | Miami-PBMC-60 | | 2,495,417 | 2,437,513 | 47,633 | 1.91% |
| C | R00-NS2185 | Miami-PBMC-61 | | 3,640,254 | 3,512,941 | 103,329 | 2.84% |
| C | R00-NS2185 | Miami-PBMC-62 | | 2,927,412 | 2,841,225 | 68,456 | 2.34% |
| C | R00-NS2185 | Miami-PBMC-63 | | 2,850,321 | 2,768,971 | 59,154 | 2.08% |
| C | R00-NS2185 | Miami-PBMC-64 | 2020-11-03 | 2,262,126 | 2,195,750 | 62,330 | 2.76% |
| C | R00-NS2185 | Miami-PBMC-65 | 2020-11-03 | 3,062,690 | 2,966,698 | 85,865 | 2.80% |
| C | R00-NS2185 | Miami-PBMC-66 | 2020-11-03 | 2,577,738 | 2,519,879 | 42,748 | 1.66% |
| C | R00-NS2185 | Miami-PBMC-67 | 2020-11-03 | 2,138,390 | 2,034,928 | 93,977 | 4.39% |
| C | R00-NS2185 | Miami-PBMC-68 | 2020-11-03 | 2,792,026 | 2,682,876 | 73,636 | 2.64% |
| C | R00-NS2185 | Miami-PBMC-69 | | 3,327,140 | 3,203,749 | 105,565 | 3.17% |
| C | R00-NS2185 | Miami-PBMC-70 | 2020-11-04 | 3,128,914 | 3,004,198 | 93,031 | 2.97% |
| C | R00-NS2185 | Miami-PBMC-71 | | 3,110,167 | 3,036,381 | 62,797 | 2.02% |
| C | R00-NS2185 | Miami-PBMC-72 | | 2,941,114 | 2,874,694 | 54,661 | 1.86% |
| C | R00-NS2185 | FDOH-BPHL001 | | 1,836,668 | 838,373 | 985,839 | 53.68% |
| C | R00-NS2185 | FDOH-BPHL002 | | 1,590,688 | 1,349,205 | 239,158 | 15.03% |
| C | R00-NS2185 | FDOH-BPHL003 | | 2,578,131 | 2,460,830 | 95,252 | 3.69% |
| C | R00-NS2185 | FDOH-BPHL004 | | 1,352,317 | 1,229,582 | 85,360 | 6.31% |
| C | R00-NS2185 | FDOH-BPHL005 | | 1,771,768 | 1,571,184 | 181,511 | 10.24% |
| C | R00-NS2185 | FDOH-BPHL006 | | 3,956,723 | 400,874 | 3,512,484 | 88.77% |
| C | R00-NS2185 | FDOH-BPHL007 | | 3,440,611 | 906,293 | 2,513,316 | 73.05% |
| C | R00-NS2185 | FDOH-BPHL008 | | 4,920,845 | 702,346 | 4,179,727 | 84.94% |
| C | R00-NS2185 | FDOH-BPHL009 | | 3,476,060 | 179,363 | 3,267,053 | 93.99% |
| C | R00-NS2185 | FDOH-BPHL010 | | 1,075,833 | 895,645 | 177,907 | 16.54% |
| C | R00-NS2185 | FDOH-BPHL011 | | 1,121,645 | 1,013,205 | 107,346 | 9.57% |
| C | R00-NS2185 | FDOH-BPHL012 | | 5,204,414 | 1,571,208 | 3,568,720 | 68.57% |
| C | R00-NS2185 | FDOH-BPHL014 | | 6,538,914 | 309,501 | 6,129,801 | 93.74% |
| C | R00-NS2185 | FDOH-BPHL015 | | 8,095,531 | 551,025 | 7,427,422 | 91.75% |
| C | R00-NS2185 | FDOH-BPHL016 | | 2,884,526 | 2,199,318 | 659,324 | 22.86% |
| C | R00-NS2185 | FDOH-BPHL017 | | 3,965,660 | 1,544,540 | 2,370,883 | 59.79% |
| C | R00-NS2185 | FDOH-BPHL018 | | 5,563,530 | 1,255,152 | 4,230,095 | 76.03% |
| C | R00-NS2185 | FDOH-BPHL019 | | 4,811,057 | 894,811 | 3,836,034 | 79.73% |
| C | R00-NS2185 | FDOH-BPHL020 | | 8,069,929 | 603,156 | 7,374,112 | 91.38% |
| C | R00-NS2185 | FDOH-BPHL021 | | 4,841,178 | 1,130,198 | 3,649,534 | 75.39% |
| C | R00-NS2185 | FDOH-BPHL022 | | 4,115,738 | 3,980,084 | 127,856 | 3.11% |
| C | R00-NS2185 | FDOH-BPHL023 | | 5,681,916 | 841,788 | 4,758,403 | 83.75% |
| C | R00-NS2185 | FDOH-BPHL024 | | 2,361,445 | 2,138,506 | 215,858 | 9.14% |
| C | R00-NS2185 | FDOH-BPHL025 | | 3,134,850 | 2,935,222 | 191,980 | 6.12% |
| C | R00-NS2185 | FDOH-BPHL026 | | 2,225,252 | 1,821,269 | 401,645 | 18.05% |
| C | R00-NS2185 | FDOH-BPHL027 | | 2,788,167 | 2,579,661 | 204,079 | 7.32% |
| C | R00-NS2185 | FDOH-BPHL028 | | 2,203,762 | 1,990,357 | 209,805 | 9.52% |
| C | R00-NS2185 | FDOH-BPHL029 | | 6,062,365 | 725,749 | 5,258,653 | 86.74% |
| C | R00-NS2185 | FDOH-BPHL030 | | 2,434,088 | 2,267,443 | 162,789 | 6.69% |
| C | R00-NS2185 | FDOH-BPHL031 | | 3,459,324 | 3,216,503 | 239,524 | 6.92% |
| C | R00-NS2185 | FDOH-BPHL032 | | 3,064,714 | 2,153,594 | 883,949 | 28.84% |
| C | R00-NS2185 | FDOH-BPHL033 | | 5,473,902 | 1,052,761 | 4,333,564 | 79.17% |
| C | R00-NS2185 | FDOH-BPHL034 | | 5,925,636 | 1,073,376 | 4,768,691 | 80.48% |
| C | R00-NS2185 | FDOH-BPHL035 | | 3,349,206 | 1,661,351 | 1,656,013 | 49.44% |
| C | R00-NS2185 | FDOH-BPHL036 | | 2,895,551 | 976,463 | 1,884,673 | 65.09% |
| C | R00-NS2185 | FDOH-BPHL037 | | 5,474,086 | 405,579 | 4,977,472 | 90.93% |
| C | R00-NS2185 | FDOH-BPHL038 | | 1,830,701 | 1,442,982 | 376,819 | 20.58% |
| C | R00-NS2185 | FDOH-BPHL039 | | 2,614,640 | 2,405,504 | 200,865 | 7.68% |
| C | R00-NS2185 | FDOH-BPHL040 | | 3,764,650 | 1,107,849 | 2,607,902 | 69.27% |
| C | R00-NS2185 | FDOH-BPHL041 | | 2,438,709 | 2,250,971 | 184,324 | 7.56% |
| C | R00-NS2185 | FDOH-BPHL042 | | 2,166,708 | 2,026,855 | 131,699 | 6.08% |
| C | R00-NS2185 | FDOH-BPHL043 | | 5,186,437 | 475,463 | 4,650,586 | 89.67% |
| C | R00-NS2185 | FDOH-BPHL044 | | 5,830,463 | 363,200 | 5,361,219 | 91.95% |
| C | R00-NS2185 | FDOH-BPHL045 | | 2,025,187 | 1,768,480 | 248,571 | 12.27% |
| C | R00-NS2185 | FDOH-BPHL046 | | 6,176,645 | 902,711 | 5,192,117 | 84.06% |
| C | R00-NS2185 | FDOH-BPHL047 | | 4,064,516 | 1,666,867 | 2,348,963 | 57.79% |
| C | R00-NS2185 | FDOH-BPHL048 | | 5,014,200 | 1,441,766 | 3,468,528 | 69.17% |
| C | R00-NS2185 | FDOH-BPHL049 | | 4,159,715 | 517,626 | 3,586,383 | 86.22% |
| C | R00-NS2185 | FDOH-BPHL050 | | 5,922,890 | 521,592 | 5,314,905 | 89.73% |
| C | R00-NS2185 | FDOH-BPHL051 | | 3,912,233 | 1,611,507 | 2,259,098 | 57.74% |
| C | R00-NS2185 | FDOH-BPHL052 | | 2,724,377 | 2,443,865 | 271,246 | 9.96% |
| C | R00-NS2185 | FDOH-BPHL053 | | 2,682,213 | 2,295,765 | 378,386 | 14.11% |
| C | R00-NS2185 | FDOH-BPHL054 | | 3,533,932 | 2,398,918 | 1,110,304 | 31.42% |
| C | R00-NS2185 | FDOH-BPHL055 | | 5,858,764 | 260,614 | 5,511,675 | 94.08% |
| C | R00-NS2185 | FDOH-BPHL056 | | 6,251,369 | 1,026,067 | 5,144,879 | 82.30% |
| C | R00-NS2185 | FDOH-BPHL057 | | 3,021,538 | 2,500,337 | 513,269 | 16.99% |
| C | R00-NS2185 | FDOH-BPHL058 | | 5,258,872 | 586,563 | 4,593,338 | 87.34% |
| C | R00-NS2185 | FDOH-BPHL059 | | 5,740,202 | 295,754 | 5,335,341 | 92.95% |
| C | R00-NS2185 | FDOH-BPHL060 | | 22,047 | 14,339 | 6,079 | 27.57% |
| C | R00-NS2185 | FDOH-BPHL061 | | 54,853 | 29,904 | 20,479 | 37.33% |
| C | R00-NS2185 | FDOH-BPHL062 | | 29,373 | 6,087 | 20,988 | 71.45% |
| C | R00-NS2185 | FDOH-BPHL063 | | 28,510 | 10,206 | 16,272 | 57.07% |
| C | R00-NS2185 | FDOH-BPHL064 | | 111,885 | 105,414 | 5,079 | 4.54% |
| C | R00-NS2185 | FDOH-BPHL065 | | 67,148 | 44,925 | 20,150 | 30.01% |
| C | R00-NS2185 | FDOH-BPHL066 | | 57,863 | 41,888 | 14,329 | 24.76% |
| C | R00-NS2185 | FDOH-BPHL067 | | 21,737 | 4,024 | 16,621 | 76.46% |
| C | R00-NS2185 | FDOH-BPHL068 | | 149,605 | 119,600 | 26,625 | 17.80% |
| C | R00-NS2185 | FDOH-BPHL069 | | 221,696 | 125,544 | 91,115 | 41.10% |
| C | R00-NS2185 | FDOH-BPHL070 | | 1,208,836 | 1,183,029 | 19,725 | 1.63% |
| C | R00-NS2185 | FDOH-BPHL071 | | 71,967 | 70,876 | 544 | 0.76% |
| C | R00-NS2185 | FDOH-BPHL072 | | 124,578 | 107,242 | 15,081 | 12.11% |
| C | R00-NS2185 | FDOH-BPHL073 | | 80,330 | 40,012 | 36,747 | 45.75% |
| C | R00-NS2185 | FDOH-BPHL074 | | 330,101 | 319,098 | 7,499 | 2.27% |
| C | R00-NS2185 | FDOH-BPHL075 | | 29,435 | 27,446 | 1,685 | 5.72% |
| C | R00-NS2185 | FDOH-BPHL076 | | 117,711 | 99,498 | 16,992 | 14.44% |
| C | R00-NS2185 | FDOH-BPHL077 | | 197,959 | 191,068 | 5,398 | 2.73% |
| C | R00-NS2185 | FDOH-BPHL078 | | 90,689 | 58,264 | 28,911 | 31.88% |