COVID-Seq reports - Salemi Lab - University of Florida

lineage results

(Click on a column header to sort the table)

Run	SampleName	SamplingDate	PangoLineage	ScorpioCall	PangoProb	PangoVersion	PangoNote
R04-NS2271	Path-Saliva-331	2021-02-16	B.1.429	Epsilon (B.1.429-like)	0.02	2021-11-18	scorpio call: Alt alleles 12; Ref alleles 2; Amb alleles 0; Oth alleles 0; scorpio replaced lineage assignment B.1
R04-NS2271	Path-Saliva-338	2021-02-16	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-339	2021-02-16	B.1.526	Iota (B.1.526-like)	0.01	2021-11-18	scorpio call: Alt alleles 18; Ref alleles 4; Amb alleles 1; Oth alleles 0
R04-NS2271	Path-Saliva-340	2021-02-16	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-343	2021-02-16	B.1.311		0.01	2021-11-18
R04-NS2271	Path-Saliva-344	2021-02-16	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-345	2021-02-16	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-346	2021-02-16	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-348	2021-02-16	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-349	2021-02-16	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-351	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-352	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-354	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.34	2021-11-18	scorpio call: Alt alleles 11; Ref alleles 1; Amb alleles 2; Oth alleles 0
R04-NS2271	Path-Saliva-355	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.17	2021-11-18	scorpio call: Alt alleles 9; Ref alleles 3; Amb alleles 2; Oth alleles 0; scorpio replaced lineage assignment B.1.580
R04-NS2271	Path-Saliva-357	2021-02-19	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-360	2021-02-19	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-362	2021-02-19	B.1.596		0.01	2021-11-18
R04-NS2271	Path-Saliva-363	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-364	2021-02-19	B.1.2		0.13	2021-11-18
R04-NS2271	Path-Saliva-365	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-366	2021-02-19	B.1.596		0.01	2021-11-18
R04-NS2271	Path-Saliva-368	2021-02-19	B.1.637		0.01	2021-11-18
R04-NS2271	Path-Saliva-371	2021-02-19	B.1.517		0.01	2021-11-18
R04-NS2271	Path-Saliva-374	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-375	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 13; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-376	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.19	2021-11-18	scorpio call: Alt alleles 9; Ref alleles 2; Amb alleles 3; Oth alleles 0
R04-NS2271	Path-Saliva-377	2021-02-19	B.1.595		0.01	2021-11-18
R04-NS2271	Path-Saliva-379	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-381	2021-02-19	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-382	2021-02-19	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-383	2021-02-19	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-384	2021-02-19	B.1.2		0.08	2021-11-18
R04-NS2271	Path-Saliva-387	2021-02-19	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-388	2021-02-19	None		0.00	2021-11-18	pangoLEARN lineage assignment B.1.1.7 was not supported by scorpio
R04-NS2271	Path-Saliva-389	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-391	2021-02-19	B.1		0.32	2021-11-18
R04-NS2271	Path-Saliva-392	2021-02-19	B.1.234		0.22	2021-11-18
R04-NS2271	Path-Saliva-396	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-398	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-729	2021-03-04	B.1.596		0.15	2021-11-18
R04-NS2271	Shands-VTM-731	2021-03-04	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-737	2021-03-05	B.1.429	Epsilon (B.1.429-like)	0.19	2021-11-18	scorpio call: Alt alleles 9; Ref alleles 3; Amb alleles 2; Oth alleles 0
R04-NS2271	Shands-VTM-738	2021-03-05	B.1.2		0.21	2021-11-18
R04-NS2271	Shands-VTM-740	2021-03-05	B.1.2		0.02	2021-11-18
R04-NS2271	Shands-VTM-741	2021-03-05	B.1		0.31	2021-11-18
R04-NS2271	Shands-VTM-744	2021-03-06	B.1.2		0.20	2021-11-18
R04-NS2271	Shands-VTM-745	2021-03-06	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-747	2021-03-06	B.1		0.01	2021-11-18
R04-NS2271	Shands-VTM-748	2021-03-06	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-749	2021-03-06	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-752	2021-03-06	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-753	2021-03-07	B.1.429	Epsilon (B.1.429-like)	0.34	2021-11-18	scorpio call: Alt alleles 9; Ref alleles 1; Amb alleles 4; Oth alleles 0
R04-NS2271	Shands-VTM-755	2021-03-08	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-756	2021-03-08	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-758	2021-03-08	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-761	2021-03-09	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-762	2021-03-09	B.1.1		0.04	2021-11-18
R04-NS2271	Shands-VTM-764	2021-03-09	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-768	2021-03-10	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-769	2021-03-10	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-771	2021-03-11	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-772	2021-03-11	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-773	2021-03-11	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-776	2021-03-12	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-778	2021-03-12	B.1.1		0.01	2021-11-18
R04-NS2271	Shands-VTM-780	2021-03-13	None		0.00	2021-11-18	pangoLEARN lineage assignment B.1.1.7 was not supported by scorpio
R04-NS2271	Shands-VTM-781	2021-03-13	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-784	2021-03-13	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-785	2021-01-26	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-399	2021-02-18	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 12; Ref alleles 2; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-403	2021-02-18	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 13; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-407	2021-02-18	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-409	2021-02-18	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-410	2021-02-18	None		0.00	2021-11-18	pangoLEARN lineage assignment B.1.1.7 was not supported by scorpio
R04-NS2271	Path-Saliva-411	2021-02-18	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-412	2021-02-18	B.1.311		0.01	2021-11-18
R04-NS2271	Path-Saliva-413	2021-02-18	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-415	2021-02-18	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-417	2021-02-18	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-419	2021-02-18	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-422	2021-02-18	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-423	2021-02-18	B.1.311		0.01	2021-11-18
R04-NS2271	Path-Saliva-424	2021-02-18	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-425	2021-02-18	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-430	2021-02-18	B.1.596		0.01	2021-11-18
R04-NS2271	Path-Saliva-431	2021-02-18	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 21; Ref alleles 2; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-433	2021-02-18	B.1.596		0.25	2021-11-18
R04-NS2271	Path-Saliva-435	2021-02-18	B.1.1.519		0.01	2021-11-18
R04-NS2271	Path-Saliva-438	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-440	2021-02-19	B.1.311		0.34	2021-11-18
R04-NS2271	Path-Saliva-441	2021-02-19	B.1.580		0.05	2021-11-18
R04-NS2271	Path-Saliva-442	2021-02-19	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-443	2021-02-19	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-446	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-452	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-454	2021-02-19	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-455	2021-02-19	B.1.1.519		0.01	2021-11-18
R04-NS2271	Path-Saliva-458	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-459	2021-02-04	B.1.429	Epsilon (B.1.429-like)	0.04	2021-11-18	scorpio call: Alt alleles 12; Ref alleles 1; Amb alleles 1; Oth alleles 0
R04-NS2271	Path-Saliva-460	2021-01-26	B.1.243		0.02	2021-11-18
R04-NS2271	Path-Saliva-461	2021-01-26	B.1.243		0.07	2021-11-18
R04-NS2271	Path-Saliva-462	2021-01-26	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-464	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-466	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-469	2021-01-26	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-470	2021-01-26	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-471	2021-01-26	B.1.311		0.03	2021-11-18
R04-NS2271	Path-Saliva-472	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-473	2021-01-26	B.1		0.01	2021-11-18
R04-NS2271	Path-Saliva-475	2021-01-26	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-478	2021-01-26	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-479	2021-01-26	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-482	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-483	2021-01-26	B.1.596		0.34	2021-11-18
R04-NS2271	Path-Saliva-484	2021-01-26	B.1.243		0.25	2021-11-18
R04-NS2271	Path-Saliva-485	2021-01-26	B.1.243		0.08	2021-11-18
R04-NS2271	Path-Saliva-486	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-487	2021-01-26	B.1.1.7	Alpha (B.1.1.7-like)	0.01	2021-11-18	scorpio call: Alt alleles 22; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-488	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-490	2021-01-26	B.1.429	Epsilon (B.1.429-like)	0.14	2021-11-18	scorpio call: Alt alleles 12; Ref alleles 0; Amb alleles 2; Oth alleles 0
R04-NS2271	Path-Saliva-493	2021-01-26	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-494	2021-01-26	B.1.596		0.13	2021-11-18
R04-NS2271	Path-Saliva-495	2021-01-26	B.1.2		0.07	2021-11-18
R04-NS2271	Path-Saliva-496	2021-01-26	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-498	2021-01-26	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-505	2021-01-26	B.1.596		0.25	2021-11-18
R04-NS2271	Path-Saliva-508	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-509	2021-01-21	B.1.243		0.36	2021-11-18
R04-NS2271	Path-Saliva-510	2021-01-21	B.1.349		0.24	2021-11-18
R04-NS2271	Path-Saliva-511	2021-01-21	B.1		0.01	2021-11-18
R04-NS2271	Path-Saliva-513	2021-01-21	B.1.311		0.01	2021-11-18
R04-NS2271	Path-Saliva-515	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-516	2021-01-21	B.1.243		0.34	2021-11-18
R04-NS2271	Path-Saliva-517	2021-01-21	B.1.177		0.26	2021-11-18
R04-NS2271	Path-Saliva-518	2021-01-21	B.1.1.7	Alpha (B.1.1.7-like)	0.16	2021-11-18	scorpio call: Alt alleles 19; Ref alleles 1; Amb alleles 3; Oth alleles 0
R04-NS2271	Path-Saliva-519	2021-01-21	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-521	2021-01-21	B.1.596		0.20	2021-11-18
R04-NS2271	Path-Saliva-523	2021-01-21	B.1.243		0.25	2021-11-18
R04-NS2271	Path-Saliva-524	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-527	2021-01-21	B.1.243		0.15	2021-11-18
R04-NS2271	Path-Saliva-528	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-529	2021-01-21	B.1		0.01	2021-11-18
R04-NS2271	Path-Saliva-530	2021-01-21	B.1.596		0.24	2021-11-18
R04-NS2271	Path-Saliva-531	2021-01-21	B.1		0.37	2021-11-18
R04-NS2271	Path-Saliva-534	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-537	2021-01-21	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-538	2021-01-21	B.1.311		0.01	2021-11-18
R04-NS2271	Path-Saliva-539	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-540	2021-01-21	B.1.311		0.01	2021-11-18
R04-NS2271	Path-Saliva-544	2021-01-21	B.1.311		0.09	2021-11-18
R04-NS2271	Path-Saliva-545	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-546	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-547	2021-01-21	B.1.596		0.08	2021-11-18
R04-NS2271	Path-Saliva-549	2021-01-21	B.1.349		0.12	2021-11-18
R04-NS2271	Path-Saliva-551	2021-01-21	B.1.596		0.04	2021-11-18
R04-NS2271	Path-Saliva-552	2021-01-21	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-553	2021-01-21	B.1.596		0.06	2021-11-18
R04-NS2271	Path-Saliva-554	2021-01-21	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-556	2021-01-21	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-557	2021-01-21	B.1.349		0.01	2021-11-18
R04-NS2271	Path-Saliva-558	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-559	2021-01-22	B.1.2		0.20	2021-11-18
R04-NS2271	Path-Saliva-560	2021-01-22	B.1.234		0.01	2021-11-18
R04-NS2271	Path-Saliva-561	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-562	2021-01-22	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-563	2021-01-22	B.1.349		0.01	2021-11-18
R04-NS2271	Path-Saliva-564	2021-01-22	B.1.375		0.01	2021-11-18
R04-NS2271	Path-Saliva-565	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-566	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-567	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-568	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-569	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-570	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-571	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-572	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-573	2021-01-22	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 13; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-574	2021-01-22	B.1.596		0.01	2021-11-18
R04-NS2271	Path-Saliva-575	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-576	2021-01-22	B.1		0.08	2021-11-18
R04-NS2271	Path-Saliva-577	2021-01-22	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 14; Ref alleles 0; Amb alleles 0; Oth alleles 0
R04-NS2271	Path-Saliva-578	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-579	2021-01-22	B.1.2		0.07	2021-11-18
R04-NS2271	Path-Saliva-580	2021-01-22	B.1.349		0.01	2021-11-18
R04-NS2271	Path-Saliva-581	2021-01-22	B.1.1		0.09	2021-11-18
R04-NS2271	Path-Saliva-583	2021-01-22	B.1.416		0.16	2021-11-18
R04-NS2271	Path-Saliva-584	2021-01-22	B.1.243		0.12	2021-11-18
R04-NS2271	Path-Saliva-585	2021-01-22	None		0.00	2021-11-18	pangoLEARN lineage assignment B.1.429 was not supported by scorpio
R04-NS2271	Path-Saliva-587	2021-01-22	B.1.595		0.01	2021-11-18
R04-NS2271	Path-Saliva-588	2021-01-22	B.1		0.01	2021-11-18
R04-NS2271	Path-Saliva-589	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-590	2021-01-22	B.1.349		0.01	2021-11-18
R04-NS2271	Path-Saliva-591	2021-01-22	B.1.349		0.01	2021-11-18
R04-NS2271	Path-Saliva-593	2021-01-22	B.1		0.21	2021-11-18
R04-NS2271	Path-Saliva-594	2021-01-22	B.1.1.222		0.01	2021-11-18
R04-NS2271	Path-Saliva-596	2021-01-22	B.1.311		0.01	2021-11-18
R04-NS2271	Path-Saliva-598	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-599	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-600	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Path-Saliva-601	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Path-Saliva-602	2021-01-22	B.1.2		0.18	2021-11-18
R04-NS2271	Path-Saliva-603	2021-01-22	B.1.596		0.01	2021-11-18
R04-NS2271	Shands-VTM-682	2021-01-22	B.1.577		0.01	2021-11-18
R04-NS2271	Shands-VTM-683	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-684	2021-01-22	B.1.588		0.01	2021-11-18
R04-NS2271	Shands-VTM-685	2021-01-22	B.1.2		0.22	2021-11-18
R04-NS2271	Shands-VTM-686	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-687	2021-01-22	B.1.234		0.01	2021-11-18
R04-NS2271	Shands-VTM-688	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-690	2021-01-22	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 13; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-691	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-693	2021-01-22	B.1.311		0.01	2021-11-18
R04-NS2271	Shands-VTM-695	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Shands-VTM-696	2021-01-22	B.1.234		0.01	2021-11-18
R04-NS2271	Shands-VTM-697	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-699	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-700	2021-01-22	B.1		0.01	2021-11-18
R04-NS2271	Shands-VTM-701	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-703	2021-01-22	B.1.429	Epsilon (B.1.429-like)	0.01	2021-11-18	scorpio call: Alt alleles 13; Ref alleles 1; Amb alleles 0; Oth alleles 0
R04-NS2271	Shands-VTM-705	2021-01-22	B.1.243		0.01	2021-11-18
R04-NS2271	Shands-VTM-708	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-709	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-710	2021-01-22	B.1.596		0.01	2021-11-18
R04-NS2271	Shands-VTM-711	2021-01-22	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-712	2021-01-21	B.1.234		0.01	2021-11-18
R04-NS2271	Shands-VTM-714	2021-01-21	B.1.404		0.01	2021-11-18
R04-NS2271	Shands-VTM-716	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-718	2021-01-21	B.1.596		0.01	2021-11-18
R04-NS2271	Shands-VTM-719	2021-01-21	B.1		0.14	2021-11-18
R04-NS2271	Shands-VTM-720	2021-01-21	B.1.2		0.01	2021-11-18
R04-NS2271	Shands-VTM-721	2021-01-21	B.1.1.519		0.01	2021-11-18
R04-NS2271	Shands-VTM-722	2021-01-21	B.1.596		0.01	2021-11-18
R04-NS2271	Shands-VTM-810	2021-04-01	B.1.240		0.01	2021-11-18
R04-NS2271	Shands-VTM-811	2021-04-01	B.1.2		0.01	2021-11-18